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HomeOpen DatasetOpenNeuro ds008755: Mouse Cocaine Self-Administration Withdrawal DTI
OpenNeuroBroad CNS / NeuroimagingOpen DatasetBIDS / NIfTI-1
Commercial Use Allowed - CC0 Public Domain

OpenNeuro ds008755: Mouse Cocaine Self-Administration Withdrawal DTI

August 31, 2026
Zachary Fernandez, Alice McQueney, Melinda Osowski, Xiang Liu
DOI: 10.18112/openneuro.ds008755.v1.0.0

Study Design & Technical Specifications

Sample Size / Cohort

4 Subjects

Subject / Study Model

CNS Experimental / Clinical Model

Analytical Modalities

MRI

Primary Abstract & Repository Description

Source: OpenNeuro
BIDS neuroimaging dataset containing MRI scans from 4 Subjects. Freely available for computational neuroscience.
CNS Open Data Deep Research Brief

Editorial Critique, Methodological Value & Reusability Guide

Structured via CNS Domain Knowledge Engine

1. Scientific Context & Premise

This resource from OpenNeuro ("OpenNeuro ds008755: Mouse Cocaine Self-Administration Withdrawal DTI") addresses critical scientific questions within Central Nervous System (CNS) Neuroscience. Research in this domain currently faces major translational bottlenecks, including bridging cellular-resolution circuit physiology with macroscale neuroimaging and reproducible cross-cohort computational modeling. By focusing on key thematic elements (OpenNeuro, BIDS, MRI), this work contributes empirical evidence toward understanding how molecular, cellular, or systems-level alterations relate to core disease pathways such as multimodal neural oscillations, transcriptomic cell-type taxonomies, structural/functional connectomics, and standardized BIDS/NWB metadata. Integrating these findings into the broader open science ecosystem helps reduce fragmentation across independent laboratories and accelerates hypothesis verification.

2. Study Architecture & Findings

Structured as an open scientific dataset, this repository leverages MRI across CNS Experimental / Clinical Model (4 Subjects). Its primary architectural value lies in providing standardized, machine-readable primary records via OpenNeuro under CC0 Public Domain. Unlike isolated summary tables in static publications, access to underlying MRI distributions enables independent inspection of signal-to-noise ratios, preprocessing parameter sensitivity, and cross-modality feature extraction.

3. Secondary Analysis & Reusability

Researchers and computational neuroscientists can reuse this resource across multiple secondary workflows: (1) Cross-Cohort Harmonization & Meta-Analysis — combining these MRI records with complementary repositories (such as OpenNeuro, DANDI, Agora, or Europe PMC) to increase statistical power; (2) Computational Benchmarking & Machine Learning — utilizing the documented features (OpenNeuro, BIDS, MRI) as training, validation, or out-of-distribution test sets for predictive biomarker discovery in Central Nervous System (CNS) Neuroscience; and (3) Experimental Protocol Alignment — referencing the study design (CNS Experimental / Clinical Model, 4 Subjects) to calibrate sample size calculations (power analysis) and endpoint selection for upcoming preclinical or clinical studies.

4. Methodological Caveats & Governance

While curated from an authoritative scientific source, secondary analysts should account for potential cohort selection biases and site-specific batch effects. Specifically, when interpreting MRI results in Central Nervous System (CNS) Neuroscience, researchers must control for confounding variables (such as age, sex, post-mortem interval, scanner/instrument drift, or medication state) and verify compliance with open-access attribution requirements (CC0 Public Domain).

Related CNS Open Data Research Playbooks & Methodology Guides
BIDS Neuroimaging Pipeline Guide: Reproducible MRI, fMRI & PET Analysis in Python
14 min read • Open Playbook
NWB & DANDI Archive Guide: Cloud Streaming & Analysis of Cellular Electrophysiology & Patch-seq
12 min read • Open Playbook

Data Access, Reproducibility & Analysis Starter Guide

BIDS (Brain Imaging Data Structure) v1.9+

BIDS / NIfTI-1

Quick Data Access & Structured Export

Open the primary repository directly or download structured metadata (JSON / CSV) in one click.

Open Primary Data (OpenNeuro)Download Data

This neuroimaging resource follows the Brain Imaging Data Structure (BIDS) specification, organizing raw NIfTI volumes (.nii.gz), acquisition parameters (.json sidecars), and participant phenotype tables (participants.tsv) in a deterministic directory hierarchy.

Programmatic Data Retrieval (Python Starter Code & Recommended SDKs)

Python Quickstart: Download & Inspect BIDS Neuroimaging Dataset

# 1. Install BIDS & Neuroimaging dependencies
# pip install openneuro-py pybids nibabel pandas

import openneuro as on
from bids import BIDSLayout
import pandas as pd

# Download metadata & subject headers from OpenNeuro (ds008755)
dataset_id = "ds008755"
target_dir = f"./data/{dataset_id}"
on.download(dataset=dataset_id, target_dir=target_dir, include=["participants.tsv", "dataset_description.json", "sub-01/*"])

# Initialize PyBIDS layout and inspect subjects & modalities
layout = BIDSLayout(target_dir, validate=False)
print(f"Subjects: {layout.get_subjects()} | Modalities: {layout.get_datatypes()}")

# Load clinical / demographic phenotype table
participants = pd.read_csv(f"{target_dir}/participants.tsv", sep="\t")
print(participants.head())

Recommended Open-Source Software & SDKs

FreeSurferDesktop / CLI

Software suite for processing and analyzing human brain structural MRI images.

ANTsPy (Advanced Normalization Tools)Python SDK

Diffeomorphic image registration, cortical thickness, and lesion segmentation.

Standardized 4-Step Workflow & Governance Checklist

Standardized Acquisition & Preprocessing Workflow

1. Retrieve BIDS Hierarchy via DataLad or AWS S3 CLI

Fetch the dataset manifest and selectively download subject anatomical/functional runs without requiring authentication credentials.

2. Run BIDS-Validator & Inspect JSON Sidecars

Verify TR (Repetition Time), TE, slice timing, and scanner field strength (3T/7T) across all subjects to detect protocol deviations.

3. Standardized Preprocessing (fMRIPrep / FreeSurfer)

Execute motion correction, susceptibility distortion correction, and MNI152NLin2009cAsym template normalization.

4. Covariate Regression & Group-Level Modeling

Merge participants.tsv clinical scores with extracted ROI/parcellation metrics while controlling for age, sex, and head motion.

Reproducibility & Governance Checklist

  • Verify BIDS dataset_description.json License and HowToAcknowledge fields before publication.
  • Exclude runs exceeding framewise displacement (FD > 0.5 mm) to prevent motion-induced false positives.
  • Ensure all anatomical scans remain defaced/de-identified in derivative repositories.

Tags & Modalities

MRI#OpenNeuro#BIDS#MRI

Bibliometrics, Peer-Review Status & Citation Export

Cross-referenced via Semantic Scholar, Europe PMC & bioRxiv

1. Citation Metrics & Context Breakdown

0
Total Citations
0
Influential Citations

Citation Context Breakdown

Citation intent breakdown (Supporting vs. Contrasting) is currently accumulating in Semantic Scholar for this record. Researchers reusing this resource should cite the primary DOI/URL using the standardized formats below.

2. Peer-Review Validation & Revision History

Verified Publication / Open Dataset Record

Metadata and license integrity verified against primary repository records.

3. Standardized Academic Citation & BibTeX Export

Selected Format (APA)
Zachary Fernandez et al. (2026). OpenNeuro ds008755: Mouse Cocaine Self-Administration Withdrawal DTI. OpenNeuro. https://doi.org/10.18112/openneuro.ds008755.v1.0.0
BibTeX Entry (LaTeX / Reference Managers)
@misc{fernandez2026open,
  title = {OpenNeuro ds008755: Mouse Cocaine Self-Administration Withdrawal DTI},
  author = {Zachary Fernandez and Alice McQueney and Melinda Osowski and Xiang Liu},
  year = {2026},
  journal = {OpenNeuro},
  howpublished = {\url{https://doi.org/10.18112/openneuro.ds008755.v1.0.0}},
  doi = {10.18112/openneuro.ds008755.v1.0.0},
  note = {CNS Open Data: general_cns}
}

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Academic Research & Medical Information Disclaimer

This page provides structured scientific metadata, methodological critiques, and open-data reusability guidelines intended strictly for neuroscience researchers and data scientists. It does not constitute medical advice, clinical diagnosis, or treatment recommendations.

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